Welcome to topicpy’s documentation!

Installation

Install topicpy by running:

pip install topicpy

This package consists of multiple modules:

  • converter: handels gene name conversions
  • geneontology: uses GSEA to perform gene ontologies
  • gtex: handle GTEx data
  • hsbmpy: handle ouput of hierarchical stochastic block model
  • hypergeom: perform hypergeometric tests
  • lda: Run sklearn LatenDirichletAllocation with some more parameters
  • tableanalyser: study distributions of a RNA-Seq data
  • TCGA_files: handle TCGA metadata

Resources