Index

_

_approx_bound() (topicpy.lda.lda method) _check_feature_names() (topicpy.lda.lda method) _check_n_features() (topicpy.lda.lda method) _check_non_neg_array() (topicpy.lda.lda method) _check_params() (topicpy.lda.lda method) _e_step() (topicpy.lda.lda method) _em_step() (topicpy.lda.lda method)

_get_param_names() (topicpy.lda.lda class method) _init_latent_vars() (topicpy.lda.lda method) _perplexity_precomp_distr() (topicpy.lda.lda method) _repr_html_ (topicpy.lda.lda attribute) _repr_html_inner() (topicpy.lda.lda method) _repr_mimebundle_() (topicpy.lda.lda method) _unnormalized_transform() (topicpy.lda.lda method) _validate_data() (topicpy.lda.lda method)

B

build_map() (in module topicpy.hypergeom)

C

clusteranalysis() (in module topicpy.hsbmpy) convert_list_to_ensg() (in module topicpy.converter)

convert_list_to_sybmols() (in module topicpy.converter) converter (in module topicpy.converter)

F

fit() (topicpy.lda.lda method)

fit_transform() (topicpy.lda.lda method) full_analysis() (topicpy.lda.lda method)

G

geneontology (in module topicpy.geneontology) get_ontology_df() (in module topicpy.geneontology)

get_params() (topicpy.lda.lda method) get_tcga_tissue() (in module topicpy.TCGA_files) gtex (in module topicpy.gtex)

H

hsbmpy (in module topicpy.hsbmpy)

hypergeom (in module topicpy.hypergeom)

L

lda (class in topicpy.lda)

P

painter (class in topicpy.hsbmpy) parameters_for_hypergeometric() (in module topicpy.hypergeom)

partial_fit() (topicpy.lda.lda method) perplexity() (topicpy.lda.lda method) plot_map() (in module topicpy.hypergeom)

Q

queryFile() (in module topicpy.TCGA_files)

queryFiles() (in module topicpy.TCGA_files)

S

save_plot_Pvalues() (in module topicpy.geneontology) scalinglawsandoverexpressed() (in module topicpy.tableanalyser)

scatterdense() (in module topicpy.tacos_plot) score() (topicpy.lda.lda method) set_params() (topicpy.lda.lda method)

T

tableanalyser (in module topicpy.tableanalyser) tacos_plot (in module topicpy.tacos_plot) TCGA_files (in module topicpy.TCGA_files) topic_analysis() (in module topicpy.geneontology) topicpy.converter (module) topicpy.geneontology (module) topicpy.gtex (module)

topicpy.hsbmpy (module) topicpy.hypergeom (module) topicpy.lda (module) topicpy.tableanalyser (module) topicpy.tacos_plot (module) topicpy.TCGA_files (module) transform() (topicpy.lda.lda method)